Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

#RaMP_Vignette.Rmd#

.DS_Store

.Rbuildignore

.dockerignore

.gitattributes

.gitignore

.travis.yml

DESCRIPTION

Dockerfile

Jenkinsfile

NAMESPACE

R/OntologyQueryFunctions.R R/RaMP.R R/ReturnAnalytes_InputPathways.R R/ReturnGeneMetab_SameRxn.R R/ReturnPathwaysEnrich_InputAnalytes.R R/SourceDataFunctions.R R/dbWorker.R R/globals.R R/metClassUtil.R R/plottingFunctions.R R/printingFunctions.R R/processNewRamp.R R/rampChemClassQueries.R R/rampChemPropQueries.R R/rampQueryHelper.R R/rampReactionQueries.R R/writingFunctions.R README.md

RaMP.Rproj

db/RaMP_SQLite_v2.3.1.sqlite.gz

db/RaMP_SQLite_v2.3.2.sqlite.gz

db/RaMP_SQLite_v2.4.0.sqlite.gz

db/RaMP_SQLite_v2.4.2.sqlite.gz

db/RaMP_SQLite_v2.4.3.sqlite.gz

db/RaMP_SQLite_v2.5.0.sqlite.gz

db/RaMP_SQLite_v2.5.4.sqlite.gz

docs/404.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/FilterFishersResults.html

docs/reference/RaMP.html

docs/reference/Rplot001.png

docs/reference/bhCorrect.html

docs/reference/buildAnalyteOverlapPerRxnLevelUpsetDatafarme.html

docs/reference/buildFrequencyTables.html

docs/reference/buildReactionClassesSunburstDatafarme.html

docs/reference/checkIdPrefixes.html

docs/reference/chemicalClassEnrichment.html

docs/reference/chemicalClassSurvey.html

docs/reference/chemicalClassSurveyRampIdsConn.html

docs/reference/chemicalClassSurveyRampIdsFullPopConn.html

docs/reference/cleanup.html

docs/reference/combineStringLists.html

docs/reference/compute_overlap_matrix.html

docs/reference/filterPathwaysByAnalyteCount.html

docs/reference/findAnalyteHasPathway.html

docs/reference/findCluster.html

docs/reference/findDuplicatePathways.html

docs/reference/find_duplicate_pathways.html

docs/reference/getAnalyteFromPathway.html

docs/reference/getChemicalProperties.html

docs/reference/getCurrentRaMPSourceDBVersions.html

docs/reference/getCurrentRaMPVersion.html

docs/reference/getCustomPathwayFromAnalyte.html

docs/reference/getEntityCountsFromSourceDBs.html

docs/reference/getMetaFromOnto.html

docs/reference/getMetabChemClass.html

docs/reference/getMetabClassDataSources.html

docs/reference/getMetabClassTypes.html

docs/reference/getOntoFromMeta.html

docs/reference/getOntologies.html

docs/reference/getPathwayFromAnalyte.html

docs/reference/getPathwayNameList.html

docs/reference/getPrefixesFromAnalytes.html

docs/reference/getRaMPAnalyteIntersections.html

docs/reference/getRaMPInfoFromAnalytes.html

docs/reference/getRampSourceInfoFromAnalyteIDs.html

docs/reference/getReactionClassStats.html

docs/reference/getReactionClassStatsOnAnalytes.html

docs/reference/getReactionClassesForAnalytes.html

docs/reference/getReactionDetails.html

docs/reference/getReactionParticipants.html

docs/reference/getReactionParticpantCounts.html

docs/reference/getReactionRheaURLs.html

docs/reference/getReactionSourceIdsFromReactionQuery.html

docs/reference/getReactionsForAnalytes.html

docs/reference/getReactionsForRaMPCompoundIds.html

docs/reference/getReactionsForRaMPGeneIds.html

docs/reference/getReactionsForSourceCompoundIds.html

docs/reference/getReactionsForSourceProteinIds.html

docs/reference/getRheaAnalyteReactionAssociations.html

docs/reference/getRheaEnzymesAndTransportersForMetabolites.html

docs/reference/getRheaMetabolitesForProteins.html

docs/reference/getTotalFoundInCategories.html

docs/reference/index.html

docs/reference/listAvailableRaMPDbVersions.html

docs/reference/listToQueryString.html

docs/reference/pathwayResultsPlot.html

docs/reference/plotAnalyteOverlapPerRxnLevel.html

docs/reference/plotCataNetwork.html

docs/reference/plotReactionClasses.html

docs/reference/processData.html

docs/reference/queryReport.html

docs/reference/rampFastCata.html

docs/reference/rampFastCataOriginal.html

docs/reference/rampFastPathFromSource.html

docs/reference/rampFindClassInfoFromSourceId.html

docs/reference/rampFindSourceFromId.html

docs/reference/rampFindSourceRampId.html

docs/reference/rampFindSynonymFromSynonym.html

docs/reference/removeLocalRampDB.html

docs/reference/runCombinedFisherTest.html

docs/reference/runFisherTest.html

docs/reference/runQuery.html

docs/reference/segregateDataBySource.html

docs/reference/updateOverlapMatrices.html

docs/reference/updateOverlapMatrix.html

docs/reference/writePathwaysToCSV.html

docs/reference/write_FishersResults.html

docs/sitemap.xml

inst/tools/db.properties.template

runtime.txt

tests/travis.Dockerfile

tests/travis_test_script.R

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.

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ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

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ncats/RaMP-DB RaMP (Relational Database of Metabolomic Pathways)

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ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)