Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

#RaMP_Vignette.Rmd#

.DS_Store

.Rbuildignore

.dockerignore

.gitattributes

.gitignore

.travis.yml

DESCRIPTION

Dockerfile

Jenkinsfile

NAMESPACE

R/OntologyQueryFunctions.R R/RaMP.R R/ReturnAnalytes_InputPathways.R R/ReturnGeneMetab_SameRxn.R R/ReturnPathwaysEnrich_InputAnalytes.R R/SourceDataFunctions.R R/compatability.R R/compatability_util.R R/dataAccess.R R/dbWorker.R R/formattingFunctions.R R/globals.R R/metClassUtil.R R/plottingFunctions.R R/printingFunctions.R R/rampChemClassQueries.R R/rampChemPropQueries.R R/rampQueryHelper.R R/rampReactionQueries.R R/similarityMatrix.R R/writingFunctions.R README.md

RaMP.Rproj

db/RaMP_SQLite_v2.3.1.sqlite.gz

db/RaMP_SQLite_v2.3.2.sqlite.gz

db/RaMP_SQLite_v2.4.0.sqlite.gz

db/RaMP_SQLite_v2.4.2.sqlite.gz

db/RaMP_SQLite_v2.4.3.sqlite.gz

db/RaMP_SQLite_v2.5.0.sqlite.gz

db/RaMP_SQLite_v2.5.4.sqlite.gz

db/RaMP_SQLite_v3.0.6.sqlite.gz

db/RaMP_SQLite_v3.0.7.sqlite.gz

docs/404.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/RaMP.html

docs/reference/Rplot001.png

docs/reference/createRaMPInput.html

docs/reference/filterEnrichResults.html

docs/reference/findCluster.html

docs/reference/getAnalyteFromPathway.html

docs/reference/getChemClass.html

docs/reference/getChemicalProperties.html

docs/reference/getCurrentRaMPSourceDBVersions.html

docs/reference/getCurrentRaMPVersion.html

docs/reference/getEntityCountsFromSourceDBs.html

docs/reference/getMetaFromOnto.html

docs/reference/getMetabChemClass.html

docs/reference/getMetabClassTypes.html

docs/reference/getOntoFromMeta.html

docs/reference/getOntologies.html

docs/reference/getPathwayFromAnalyte.html

docs/reference/getPathwayNameList.html

docs/reference/getPrefixesFromAnalytes.html

docs/reference/getRaMPAnalyteIntersections.html

docs/reference/getReactionClassesForAnalytes.html

docs/reference/getReactionDetails.html

docs/reference/getReactionParticipants.html

docs/reference/getReactionsForAnalytes.html

docs/reference/getRheaAnalyteReactionAssociations.html

docs/reference/get_remote_db_version_list.html

docs/reference/index.html

docs/reference/listAvailableRaMPDbVersions.html

docs/reference/package-deprecated.html

docs/reference/plotAnalyteOverlapPerRxnLevel.html

docs/reference/plotCataNetwork.html

docs/reference/plotChemicalClass.html

docs/reference/plotOntologyEnrichmentResults.html

docs/reference/plotPathwayResults.html

docs/reference/plotReactionClasses.html

docs/reference/rampFastCata.html

docs/reference/removeLocalRampDB.html

docs/reference/runEnrichChemClass.html

docs/reference/runEnrichOntologies.html

docs/reference/runEnrichPathways.html

docs/reference/runEnrichReactionClass.html

docs/reference/runQuery.html

docs/reference/writeFishersResults.html

docs/reference/writePathwaysToCSV.html

docs/sitemap.xml

inst/extdata/ExampleRaMPInput.csv

inst/tools/db.properties.template

install.R man/RaMP.Rd man/createRaMPInput.Rd man/filterEnrichResults.Rd man/findCluster.Rd man/getAnalyteFromPathway.Rd man/getChemClass.Rd man/getChemicalProperties.Rd man/getCurrentRaMPSourceDBVersions.Rd man/getCurrentRaMPVersion.Rd man/getEntityCountsFromSourceDBs.Rd man/getMetaFromOnto.Rd man/getMetabChemClass.Rd man/getMetabClassTypes.Rd man/getOntoFromMeta.Rd man/getOntologies.Rd man/getPathwayFromAnalyte.Rd man/getPathwayNameList.Rd man/getPrefixesFromAnalytes.Rd man/getRaMPAnalyteIntersections.Rd man/getReactionClassesForAnalytes.Rd man/getReactionDetails.Rd man/getReactionParticipants.Rd man/getReactionsForAnalytes.Rd man/getRheaAnalyteReactionAssociations.Rd man/get_remote_db_version_list.Rd man/listAvailableRaMPDbVersions.Rd man/package-deprecated.Rd man/plotAnalyteOverlapPerRxnLevel.Rd man/plotCataNetwork.Rd man/plotChemicalClass.Rd man/plotOntologyEnrichmentResults.Rd man/plotPathwayResults.Rd man/plotReactionClasses.Rd man/rampFastCata.Rd man/removeLocalRampDB.Rd man/runEnrichChemClass.Rd man/runEnrichOntologies.Rd man/runEnrichPathways.Rd man/runEnrichReactionClass.Rd man/runQuery.Rd man/writeFishersResults.Rd man/writePathwaysToCSV.Rd

runtime.txt

tests/travis.Dockerfile

tests/travis_test_script.R

ncats/RaMP-DB documentation built on June 10, 2025, 10:50 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

R Package Documentation

Browse R Packages

We want your feedback!

ncats/RaMP-DB RaMP (Relational Database of Metabolomic Pathways)

Files in ncats/RaMP-DB RaMP (Relational Database of Metabolomic Pathways)

R Package Documentation

Browse R Packages

We want your feedback!

ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)