RefinedMapping: Quantitative refinement of spatial inferences
In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics
Description
Usage
Arguments
Details
Value
Description
Refines the initial mapping with more complex models that allow gene
expression to vary quantitatively across bins (instead of 'on' or 'off'),
and that also considers the covariance structure between genes.
Usage
1
RefinedMapping(object, genes.use)
Arguments
object
Seurat object
genes.use
Genes to use to drive the refinement procedure.
Details
Full details given in spatial mapping manuscript.
Value
Seurat object, where mapping probabilities for each bin are stored
in object@final.prob
nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.
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Description Usage Arguments Details Value
Description
Refines the initial mapping with more complex models that allow gene expression to vary quantitatively across bins (instead of 'on' or 'off'), and that also considers the covariance structure between genes.
Usage
1 | RefinedMapping(object, genes.use)
|
Arguments
object |
Seurat object |
genes.use |
Genes to use to drive the refinement procedure. |
Details
Full details given in spatial mapping manuscript.
Value
Seurat object, where mapping probabilities for each bin are stored in object@final.prob
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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