ReorderIdent: Reorder identity classes

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Re-assigns the identity classes according to the average expression of a particular feature (i.e, gene expression, or PC score) Very useful after clustering, to re-order cells, for example, based on PC scores

Usage

ReorderIdent(object, feature = "PC1", rev = FALSE, aggregate.fxn = mean,
  reorder.numeric = FALSE, ...)

Arguments

object	Seurat object
feature	Feature to reorder on. Default is PC1
rev	Reverse ordering (default is FALSE)
aggregate.fxn	Function to evaluate each identity class based on (default is mean)
reorder.numeric	Rename all identity classes to be increasing numbers starting from 1 (default is FALSE)
...	additional arguemnts (i.e. use.imputed=TRUE)

Value

A seurat object where the identity have been re-oredered based on the average.

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.