Description Usage Arguments Details
These functions are provided for compatibility with older version of the Seurat package. They may eventually be completely removed.
1 |
... |
Parameters to be passed to the modern version of the function |
setup | now a synonym for Setup |
vlnPlot | now a synonym for VlnPlot |
subsetData | now a synonym for SubsetData |
mean.var.plot | now a synonym for MeanVarPlot |
pca | now a synonym for PCA |
project.pca | now a synonym for ProjectPCA |
print.pca | now a synonym for PrintPCA |
viz.pca | now a synonym for VizPCA |
set.ident | now a synonym for SetIdent |
pca.plot | now a synonym for PCAPlot |
pcHeatmap | now a synonym for PCHeatmap |
jackStraw | now a synonym for JackStraw |
jackStrawPlot | now a synonym for JackStrawPlot |
run_tsne | now a synonym for RunTSNE |
tsne.plot | now a synonym for TSNEPlot |
find.markers | now a synonym for FindMarkers |
find_all_markers | now a synonym for FindAllMarkers |
genePlot | now a synonym for GenePlot |
feature.plot | now a synonym for FeaturePlot |
buildClusterTree | now a synonym for BuildClusterTree |
plotClusterTree | now a synonym for PlotClusterTree |
plotNoiseModel | now a synonym for PlotNoiseModel |
add_samples | now a synonym for AddSamples |
subsetCells | now a synonym for SubsetCells |
project.samples | now a synonym for ProjectSamples |
run_diffusion | now a synonym for RunDiffusion |
ica | now a synonym for ICA |
cluster.alpha | now a synonym for ClusterAlpha |
reorder.ident | now a synonym for ReorderIdent |
average.pca | now a synonym for AveragePCA |
average.expression | now a synonym for AverageExpression |
icTopGenes | now a synonym for ICTopGenes |
pcTopGenes | now a synonym for PCTopGenes |
pcTopCells | now a synonym for PCTopCells |
fetch.data | now a synonym for FetchData |
viz.ica | now a synonym for VizIca |
getWeightMatrix | now a synonym for GetWeightMatrix |
regulatorScore | now a synonym for RegulatorScore |
find.markers.node | now a synonym for FindMarkersNode |
diffExp.test | now a synonym for DiffExpTest |
tobit.test | now a synonym for TobitTest |
batch.gene | now a synonym for BatchGene |
marker.test | now a synonym for MarkerTest |
diff.t.test | now a synonym for DiffTTest |
which.cells | now a synonym for WhichCells |
set.all.ident | now a synonym for SetAllIdent |
rename.ident | now a synonym for RenameIdent |
posterior.plot | now a synonym for PosteriorPlot |
map.cell | now a synonym for MapCell |
get.centroids | now a synonym for GetCentroids |
refined.mapping | now a synonym for RefinedMapping |
initial.mapping | now a synonym for InitialMapping |
calc.insitu | now a synonym for CalcInsitu |
fit.gene.k | now a synonym for FitGeneK |
fit.gene.mix | now a synonym for FitGeneMix |
addSmoothedScore | now a synonym for AddSmoothedScore |
addImputedScore | now a synonym for AddImputedScore |
getNewScore | now a synonym for GetNewScore |
calcNoiseModels | now a synonym for CalcNoiseModels |
feature.plot.keynote | now a synonym for FeaturePlotKeynote |
feature.heatmap | now a synonym for FeatureHeatmap |
ica.plot | now a synonym for ICAPlot |
dim.plot | now a synonym for DimPlot |
spatial.de | now a synonym for SpatialDe |
DBclust_dimension | now a synonym for DBClustDimension |
Kclust_dimension | now a synonym for KClustDimension |
pca.sig.genes | now a synonym for PCASigGenes |
doHeatMap | now a synonym for DoHeatMap |
icHeatmap | now a synonym for ICHeatmap |
doKMeans | now a synonym for DoKMeans |
genes.in.cluster | now a synonym for GenesInCluster |
kMeansHeatmap | now a synonym for KMeansHeatmap |
cell.cor.matrix | now a synonym for CellCorMatrix |
gene.cor.matrix | now a synonym for GeneCorMatrix |
calinskiPlot | now a synonym for CalinskiPlot |
dot.plot | now a synonym for DotPlot |
addMetaData | now a synonym for AddMetaData |
removePC | now a synonym for RemovePC |
geneScorePlot | now a synonym for GeneScorePlot |
cellPlot | now a synonym for CellPlot |
jackStraw.permutation.test | now a synonym for JackStrawPermutationTest |
jackStrawMC | now a synonym for JackStrawMC |
jackStrawFull | now a synonym for JackStrawFull |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.