TSNEPlot: Plot tSNE map

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Graphs the output of a tSNE analysis Cells are colored by their identity class.

Usage

TSNEPlot(object, do.label = FALSE, pt.size = 1, label.size = 4,
  cells.use = NULL, colors.use = NULL, ...)

Arguments

object	Seurat object
do.label	FALSE by default. If TRUE, plots an alternate view where the center of each cluster is labeled
pt.size	Set the point size
label.size	Set the size of the text labels
cells.use	Vector of cell names to use in the plot.
colors.use	Manually set the color palette to use for the points
...	Additional parameters to DimPlot, for example, which dimensions to plot.

Details

This function is a wrapper for DimPlot. See ?DimPlot for a full list of possible arguments which can be passed in here.

See Also

DimPlot

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.