TobitTest: Differential expression testing using Tobit models

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Identifies differentially expressed genes between two groups of cells using Tobit models, as proposed in Trapnell et al., Nature Biotechnology, 2014

Usage

TobitTest(object, cells.1, cells.2, genes.use = NULL, print.bar = TRUE)

Arguments

object	Seurat object
cells.1	Group 1 cells
cells.2	Group 2 cells
genes.use	Genes to test. Default is to use all genes
print.bar	Print a progress bar once expression testing begins (uses pbapply to do this)

Value

Returns a p-value ranked matrix of putative differentially expressed genes.

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.