ValidateClusters: Cluster Validation

Description Usage Arguments Value

Description

Methods for validating the legitimacy of clusters using classification. SVMs are used as the basis for the classification. Merging is done based on the connectivity from an SNN graph.

Usage

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ValidateClusters(object, pc.use = NULL, top.genes = 30,
  min.connectivity = 0.01, acc.cutoff = 0.9, verbose = TRUE)

Arguments

object

Seurat object

pc.use

Which PCs to use for model construction

top.genes

Use the top X genes for model construction

min.connectivity

Threshold of connectedness for comparison of two clusters

acc.cutoff

Accuracy cutoff for classifier

verbose

Controls whether to display progress and merge results

Value

Returns a Seurat object, object@ident has been updated with new cluster info


nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.