Description Usage Arguments Value
Methods for validating the legitimacy of clusters using classification. SVMs are used as the basis for the classification. Merging is done based on the connectivity from an SNN graph.
1 2 | ValidateClusters(object, pc.use = NULL, top.genes = 30,
min.connectivity = 0.01, acc.cutoff = 0.9, verbose = TRUE)
|
object |
Seurat object |
pc.use |
Which PCs to use for model construction |
top.genes |
Use the top X genes for model construction |
min.connectivity |
Threshold of connectedness for comparison of two clusters |
acc.cutoff |
Accuracy cutoff for classifier |
verbose |
Controls whether to display progress and merge results |
Returns a Seurat object, object@ident has been updated with new cluster info
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