caoGenes: cluster and order genes
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
cluster and order genes
Usage
1
caoGenes(expSmooth, expDat, dynRes, k = 3, pThresh = 0.01, method = "kmeans")
Arguments
expSmooth
expression matrix
dynRes
result of running findDynGenes
k
number of clusters
pThresh
pval threshold
Value
data.frame of dynamically expressed genes, cluster, peakTime, ordered by peaktime
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
cluster and order genes
Usage
1 | caoGenes(expSmooth, expDat, dynRes, k = 3, pThresh = 0.01, method = "kmeans")
|
Arguments
expSmooth |
expression matrix |
dynRes |
result of running findDynGenes |
k |
number of clusters |
pThresh |
pval threshold |
Value
data.frame of dynamically expressed genes, cluster, peakTime, ordered by peaktime
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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