plot_top_regulators: quick plot of top regulators in dynamic networks
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
quick plot of top regulators in dynamic networks
Usage
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plot_top_regulators(
grn,
gene_ranks,
tfs,
numTopTFs = 5,
numTargets = 5,
only_TFs = TRUE,
order = NULL
)
Arguments
grn
the result of running epochGRN
gene_ranks
the result of running compute_pagerank
tfs
tfs
numTopTFs
number of top regulators to plot
numTargets
number of top targets to plot for each regulator
only_TFs
plot only TF network
order
which epochs or transitions to plot
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description
quick plot of top regulators in dynamic networks
Usage
1 2 3 4 5 6 7 8 9 | plot_top_regulators(
grn,
gene_ranks,
tfs,
numTopTFs = 5,
numTargets = 5,
only_TFs = TRUE,
order = NULL
)
|
Arguments
grn |
the result of running epochGRN |
gene_ranks |
the result of running compute_pagerank |
tfs |
tfs |
numTopTFs |
number of top regulators to plot |
numTargets |
number of top targets to plot for each regulator |
only_TFs |
plot only TF network |
order |
which epochs or transitions to plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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