dynamic_difference_network: Compute a dynamic difference network

Description Usage Arguments Value

View source: R/5_networkComparison.R

Description

Compute a dynamic difference network

Usage

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dynamic_difference_network(
  edgeDF,
  epochs,
  condition,
  type,
  diff_thresh = 3,
  condition_thresh = 6
)

Arguments

edgeDF

the result of running edge_uniqueness

epochs

list of epoch gene assignments

condition

condition of interest, should be one of the treatment (aka network name) or column names in edgeDF

type

"on" or "off" specifies either finding edges that are active in the condition network but off others or inactive in condition network but active in others

diff_thresh

edge difference threshold to determine if edge is uniquely on or off

condition_thresh

edge weight theshold in condition network to keep or filter out in difference network

Value

list of dataframes representing the dynamic difference network


pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.