plot_targets_with_top_regulators: quick plot of top regulators given targets in dynamic...
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
quick plot of top regulators given targets in dynamic networks based on reconstruction weight
Usage
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plot_targets_with_top_regulators(
grn,
targets,
weight_column = "zscore",
gene_ranks = NULL,
numTopRegulators = 5,
order = NULL
)
Arguments
grn
the result of running epochGRN
targets
targets
weight_column
column name containing reconstruction weights to use
numTopRegulators
number of top regulators to plot
order
which epochs or transitions to plot
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description
quick plot of top regulators given targets in dynamic networks based on reconstruction weight
Usage
1 2 3 4 5 6 7 8 | plot_targets_with_top_regulators(
grn,
targets,
weight_column = "zscore",
gene_ranks = NULL,
numTopRegulators = 5,
order = NULL
)
|
Arguments
grn |
the result of running epochGRN |
targets |
targets |
weight_column |
column name containing reconstruction weights to use |
numTopRegulators |
number of top regulators to plot |
order |
which epochs or transitions to plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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