plot_targets_with_top_regulators_detail: quick plot of top regulators given targets in dynamic...

In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data

Description

quick plot of top regulators given targets in dynamic networks based on reconstruction weight, colored by expression and interaction type

Usage

plot_targets_with_top_regulators_detail(
  grn,
  targets,
  epochs,
  weight_column = "zscore",
  gene_ranks = NULL,
  numTopRegulators = 5,
  order = NULL,
  fixed_layout = TRUE,
  layout_alg = "fr",
  declutter = TRUE
)

Arguments

grn	the result of running epochGRN
targets	targets
epochs	result of running assign_epochs
weight_column	column name containing reconstruction weights to use
numTopRegulators	number of top regulators to plot
order	which epochs or transitions to plot
fixed_layout	whether or not to fix node positions across epoch networks
layout_alg	layout algorithm if fixed_layout. Defaults to FR. Ignored if fixed_layout==FALSE.
declutter	if TRUE, will only label nodes with active interactions in given network

pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.