grnKsmooth: smooths expression
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
smooths expression across cells in path
Usage
1
grnKsmooth(expDat, cells, BW = 0.25)
Arguments
expDat
expression matrix
cells
sample table that includes "cell_name" "pseudotime" "group"
BW
bandwith for kernel smoother
npoints
n.points parameter for kernel smoother
Value
smoothed matrix
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
smooths expression across cells in path
Usage
1 | grnKsmooth(expDat, cells, BW = 0.25)
|
Arguments
expDat |
expression matrix |
cells |
sample table that includes "cell_name" "pseudotime" "group" |
BW |
bandwith for kernel smoother |
npoints |
n.points parameter for kernel smoother |
Value
smoothed matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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