Description Usage Arguments Value
View source: R/5_networkComparison.R
Computes Jaccard similarity between top regulators in two sets of networks
1 2 3 4 5 6 7 8 9 | compute_JI_topregs(
netlist1,
netlist2,
n_regs = 15,
method = "pagerank",
weight_column = "zscore",
compare_within_netlist1 = TRUE,
compare_within_netlist2 = TRUE
)
|
netlist1 |
list of grnDFs |
netlist2 |
list of grnDFs |
n_regs |
the number of top regulators to compare from each network |
method |
method to find top regulators. Currently only supports "pagerank" |
weight_column |
column name in grnDFs containing edge weights |
compare_within_netlist1 |
whether or not to do pairwise comparisons between networks in netlist1 |
compare_within_netlist2 |
whether or not to do pairwise comparisons between networks in netlist2 |
dataframe of Jaccard similarities of top regulators
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