compute_JI_topregs: Computes Jaccard similarity between top regulators in two...

Description Usage Arguments Value

View source: R/5_networkComparison.R

Description

Computes Jaccard similarity between top regulators in two sets of networks

Usage

1
2
3
4
5
6
7
8
9
compute_JI_topregs(
  netlist1,
  netlist2,
  n_regs = 15,
  method = "pagerank",
  weight_column = "zscore",
  compare_within_netlist1 = TRUE,
  compare_within_netlist2 = TRUE
)

Arguments

netlist1

list of grnDFs

netlist2

list of grnDFs

n_regs

the number of top regulators to compare from each network

method

method to find top regulators. Currently only supports "pagerank"

weight_column

column name in grnDFs containing edge weights

compare_within_netlist1

whether or not to do pairwise comparisons between networks in netlist1

compare_within_netlist2

whether or not to do pairwise comparisons between networks in netlist2

Value

dataframe of Jaccard similarities of top regulators


pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.