Description Usage Arguments Value
View source: R/5_networkComparison.R
Computes Jaccard similarity between top regulators in two sets of networks
1 2 3 4 5 6 7 8 9  | compute_JI_topregs(
  netlist1,
  netlist2,
  n_regs = 15,
  method = "pagerank",
  weight_column = "zscore",
  compare_within_netlist1 = TRUE,
  compare_within_netlist2 = TRUE
)
 | 
netlist1 | 
 list of grnDFs  | 
netlist2 | 
 list of grnDFs  | 
n_regs | 
 the number of top regulators to compare from each network  | 
method | 
 method to find top regulators. Currently only supports "pagerank"  | 
weight_column | 
 column name in grnDFs containing edge weights  | 
compare_within_netlist1 | 
 whether or not to do pairwise comparisons between networks in netlist1  | 
compare_within_netlist2 | 
 whether or not to do pairwise comparisons between networks in netlist2  | 
dataframe of Jaccard similarities of top regulators
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