plot_dynnet_detail: Plot the dynamic differential network but colored by...

Description Usage Arguments

View source: R/4_plotting.R

Description

Plot the dynamic differential network but colored by communities and optionally faded by betweenness

Usage

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plot_dynnet_detail(
  grn,
  tfs,
  only_TFs = TRUE,
  order = NULL,
  weight_column = "zscore",
  communities = NULL,
  compute_betweenness = TRUE
)

Arguments

grn

the dynamic network

tfs

TFs

only_TFs

whether or not to only plot TFs and exclude non-regulators

order

the order in which to plot epochs, or which epochs to plot

weight_column

column name with edge weights

communities

community assignments or the result of running find_commumities.The names in this object should match the names of the epoch networks in grn. If NULL, it will be automatically run.

compute_betweenness

whether or not to fade nodes by betweenness


pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.