find_cuts_by_similarity: Returns cuts to define epochs
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
Returns cuts to define epochs via sliding window comparison
Usage
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find_cuts_by_similarity(
expDat,
dynRes,
winSize = 2,
limit_to = NULL,
pThresh_dyn = 0.05
)
Arguments
expDat
genes-by-cells expression matrix
dynRes
result of running findDynGenes or define_epochs
winSize
number of cells to each side to compare each cell to
limit_to
vector of genes on which to base epoch cuts, for example, limiting to TFs
pThresh_dyn
pval threshold if gene is dynamically expressed
Value
vector of pseudotimes at which to cut data into epochs
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
Returns cuts to define epochs via sliding window comparison
Usage
1 2 3 4 5 6 7 | find_cuts_by_similarity(
expDat,
dynRes,
winSize = 2,
limit_to = NULL,
pThresh_dyn = 0.05
)
|
Arguments
expDat |
genes-by-cells expression matrix |
dynRes |
result of running findDynGenes or define_epochs |
winSize |
number of cells to each side to compare each cell to |
limit_to |
vector of genes on which to base epoch cuts, for example, limiting to TFs |
pThresh_dyn |
pval threshold if gene is dynamically expressed |
Value
vector of pseudotimes at which to cut data into epochs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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