epochGRN: Divides grnDF into epochs, filters interactions between genes...
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
Divides grnDF into epochs, filters interactions between genes not in same or consecutive epochs
Usage
1
Arguments
grnDF
result of GRN reconstruction
epochs
result of running assign_epochs
epoch_network
dataframe outlining higher level epoch connectivity (i.e. epoch transition network). If NULL, will assume epochs is ordered linear trajectory
Value
list of GRNs across epochs and transitions
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
Divides grnDF into epochs, filters interactions between genes not in same or consecutive epochs
Usage
1 |
Arguments
grnDF |
result of GRN reconstruction |
epochs |
result of running assign_epochs |
epoch_network |
dataframe outlining higher level epoch connectivity (i.e. epoch transition network). If NULL, will assume epochs is ordered linear trajectory |
Value
list of GRNs across epochs and transitions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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