Description Usage Arguments Value
uses slingshot approach
1 2 3 4 5 6 7 8 9 | findDynGenes(
expDat,
sampTab,
path = NULL,
group_column = "dpt_groups",
pseudotime_column = "pseudotime",
method = "gam",
expRaw = NULL
)
|
expDat |
properly normalized expression matrix |
sampTab |
sample table that includes pseudotime, rownames = cell_name, and a group column |
path |
vector of group names to include |
group_column |
column name in sampTab annotating groups in the path |
pseudotime_column |
column name in sampTab annotating pseudotime or latent time |
method |
method to find dynamic genes. Defaults to "gam", if "tradeseq", must provide expRaw |
expRaw |
raw expression matrix, required if method="tradeseq" |
pvals and cell info
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