plot_heatmap_by_treatment: Useful plotting function to plot heatmap with pre-split expX

Description Usage Arguments Value

View source: R/6_networkAnalysis.R

Description

Useful plotting function to plot heatmap with pre-split expX

Usage

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plot_heatmap_by_treatment(
  expList,
  sampTab,
  pseudotime_column = "latent_time",
  toScale = T,
  limits = c(0, 5),
  smooth = TRUE,
  anno_colors = NULL,
  fontSize = 8
)

Arguments

expList

list of expression matrices

sampTab

sample table

pseudotime_column

column in sample table containing pseudotime annotation

toScale

whether or not to scale expression

limits

limits on expression

smooth

whether or not to smooth expression across pseudotime for cleaner plotting

anno_colors

annotation colors

fontSize

heatmap font size

Value

pheatmap


pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.