diffcp: diffcp function

Description Usage Arguments Value Examples

View source: R/diffcp.R

Description

Computes differential copy number genes between high and low group by Chi-squared test

Usage

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diffcp(pat2, cp)

Arguments

pat2

data frame generated by rnasubset function

cp

data frame of copy number matrix

Value

data frame with frequency of copy number changes in high and low group with p-value from Chi-squared test

Examples

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gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
diffcp(sox10.pat, cp)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.