rnareact: rnareact function

Description Usage Arguments Value Examples

View source: R/rnareact.R

Description

Uses ReactomePA to find enriched pathways from the RNAseq differential gene analysis

Usage

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rnareact(deg)

Arguments

rnadeg

data frame generated by topTable of limma output

lookup

data frame of entrez ID and gene name pairs

Value

data frame of enrichment for Reactome gene sets

Examples

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data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.deg <- rnadeg(sox10.pat, rna)
sox10.react <- rnareact(sox10.deg)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.