rnagsvasig: rnagsvasig function
In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data
Description
Usage
Arguments
Value
Examples
Description
Uses GSVA to find gene set enrichment across samples
Usage
1
rnagsvasig(pat2, rnagsva_out)
Arguments
pat2
data frame generated by rnasubset function
rnagsva
data frame generated by rnagsva
Value
data frame of logFC values for gene sets
Examples
1
2
3
4
5
data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.gsva <- rnagsva(sox10.pat, rna)
sox10.gsva.sig <- rnagsvasig(sox10.pat, sox10.gsva)
pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.
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Description Usage Arguments Value Examples
Description
Uses GSVA to find gene set enrichment across samples
Usage
1 | rnagsvasig(pat2, rnagsva_out)
|
Arguments
pat2 |
data frame generated by rnasubset function |
rnagsva |
data frame generated by rnagsva |
Value
data frame of logFC values for gene sets
Examples
1 2 3 4 5 | data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.gsva <- rnagsva(sox10.pat, rna)
sox10.gsva.sig <- rnagsvasig(sox10.pat, sox10.gsva)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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