diffmut: diffmut function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Computes differentially mutated genes between high and low group by Chi-squared test

Usage

diffmut(pat2, mut)

Arguments

pat2	data frame generated by rnasubset function
mut	data frame of mutation matrix

Value

data frame with frequency of mutation in high and low group with p-value from Chi-squared test

Examples

data(skcm)
gene <- "SOX10"
sox10 <- rnasubset(pat, rna, gene, 10)
diffmut(sox10, mut, gene)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.