rnasubset: rnasubset function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Adds gene expression column and gene level columns to patient table

Adds gene expression column and gene level columns to patient table

Usage

rnasubset(pat, rna, gene, percent)

rnasubset(pat, rna, gene, percent)

Arguments

pat	data frame with patient data, each patient is one row
rna	data frame with RNAseq count values, genes in rows, patients in columns
gene	character(1) Gene symbol
percent	numeric(1) percentile of patients to compare 1-50
pat	data frame with patient data, each patient is one row
rna	data frame with RNAseq count values, genes in rows, patients in columns
gene	character(1) Gene symbol
percent	numeric(1) percentile of patients to compare 1-50

Value

Returns a data frame with additional columns for gene of interest expression levels and identifier for high, middle and low groups

Returns a data frame with additional columns for gene of interest expression levels and identifier for high, middle and low groups

Examples

data(skcm)
rnasubset(pat, rna, "SOX10", 10)

data(skcm)
rnasubset(pat, rna, "SOX10", 10)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.