plotlymut: plotlymut function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Draws plotly plot of mutations

Usage

plotlymut(pat2, mut, genemut, gene)

Arguments

pat2	data frame generated by rnasubset function
mut	data frame of mutation matrix
genemut	data frame generated from diffmut function
gene	character(1) gene of interest

Value

interactive oncoprint-like plot for top 20 differentially mutated genes

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.mut <- diffmut(sox10.pat, mut)
plotlymut(sox10.pat, mut, sox10.mut, gene)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.