mutsubset: mutsubset function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Adds mutation column to patient table

Usage

mutsubset(pat, rna, mut, gene)

Arguments

pat	data frame with patient data, each patient is one row
rna	data frame with RNAseq count values, genes in rows, patients in columns
mut	data frame with binary mutation, one gene per row, one patient per column
gene	character(1) Gene symbol

Value

Returns a data frame with mutation of gene as WT or mut and gene expression

Examples

data(skcm)
mutsubset(pat, rna, mut, "SOX10")

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.