rnaheat: rnaheat function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses ComplexHeatmap to draw heatmap

Usage

rnaheat(pat2, rna, deg, gene, n = NULL)

Arguments

pat2	data frame generated by rnasubset function
rna	data frame of RNAseq values
deg	data frame of differential expressed genes from rnadeg function
gene	character(1) Gene symbol of gene of interest
n	numeric(1) Number of genes you want to plot, default is all significant genes

Value

ComplexHeatmap of top 100 significant differentially expressed genes

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 50)
sox10.deg <- rnadeg(sox10.pat, rna)
rnaheat(sox10.pat, rna, sox10.deg, gene, n)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.