rnaheat: rnaheat function

Description Usage Arguments Value Examples

View source: R/rnaheat.R

Description

Uses ComplexHeatmap to draw heatmap

Usage

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rnaheat(pat2, rna, deg, gene, n = NULL)

Arguments

pat2

data frame generated by rnasubset function

rna

data frame of RNAseq values

deg

data frame of differential expressed genes from rnadeg function

gene

character(1) Gene symbol of gene of interest

n

numeric(1) Number of genes you want to plot, default is all significant genes

Value

ComplexHeatmap of top 100 significant differentially expressed genes

Examples

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data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 50)
sox10.deg <- rnadeg(sox10.pat, rna)
rnaheat(sox10.pat, rna, sox10.deg, gene, n)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.