rnagsvaheat: rnagsvaheat function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses ComplexHeatmap to draw heatmap for GSVA analysis

Usage

rnagsvaheat(pat2, rna_gsva, rna_gsvasig, gene)

Arguments

pat2	data frame generated by rnasubset function
gene	character(1) Gene symbol of gene of interest
rnagsva	data frame of GSVA values
rnasgsvasig	data frame of significant gene sets from rnagsvasig function

Value

ComplexHeatmap of top 100 significant gene sets

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 5)
sox10.gsva <- rnagsva(sox10.pat, rna)
sox10.gsva.sig <- rnagsvasig(sox10.pat, sox10.gsva)
rnagsvaheat(sox10.pat, sox10.gsva, sox10.gsva.sig, gene)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.