rppadeg: rppadeg function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses limma to find differentially expressed proteins between the high and low groups

Usage

rppadeg(pat2, rppa)

Arguments

pat2	data frame generated by rnasubset function
rppa	data frame of RPPA values

Value

data frame of significant differentially expressed proteins between the two groups defined in rnasubset or mutsubset

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.deg <- rppadeg(sox10.pat, rppa)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.