plotlycp: plotlycp function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Draws plotly plot of copy number matrix

Usage

plotlycp(pat2, cp, genecp, gene)

Arguments

pat2	data frame generated by rnasubset function
cp	data frame of mutation matrix
genecp	data frame generated by diffcp function
gene	character(1) gene of interest

Value

interactive oncoprint-like plot for top 20 differentially copy number altered genes

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.cp <- diffcp(sox10.pat, cp)
plotlycp(sox10.pat, cp, sox10.cp, gene)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.