rnagsva: rnagsva function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses GSVA to find gene set enrichment across samples

Usage

rnagsva(pat2, rna)

Arguments

pat2	data frame generated by rnasubset function
rna	data frame of RNAseq values

Value

data frame of gsva values for all samples

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.gsva <- rnagsva(sox10.pat, rna)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.