rnamethdeg: rnamethdeg function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses limma to find differentially methylated islands between the high and low groups

Usage

rnamethdeg(pat2, meth)

Arguments

pat2	data frame generated by rnasubset function
meth	data frame of CpG Island methylation values

Value

data frame of significant differentially methylated islands between the two groups defined in rnasubset or mutsubset

Examples

data(skcm)
gene <- "SOX10"
sox10.rna <- rnasubset(pat, rna, gene, 10)
sox10.methdeg <- rnamethdeg(sox10.rna, meth)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.