rnadeg: rnadeg function

In pcheng84/TCGAbrowser: Explores and Analyzses TCGA Data

Description

Uses voom to find differentially expressed genes between the high and low groups

Usage

rnadeg(pat2, rna)

Arguments

pat2	data frame generated by rnasubset function
rna	data frame of RNAseq values

Value

data frame of significant differentially expressed genes between the two groups defined in rnasubset or mutsubset

Examples

data(skcm)
gene <- "SOX10"
sox10.pat <- rnasubset(pat, rna, gene, 10)
sox10.deg <- rnadeg(sox10.pat, rna)

pcheng84/TCGAbrowser documentation built on Sept. 7, 2021, 8:28 p.m.