Man pages for rmflight/ccPaper
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calcFractioncalculate fraction of genes annotated to GO terms
collapseProbescollapse probes to genes
cucCCOutput.RDatacucCCOutput.RData
cucCCOutPut.RDatacucCCOutPut.RData
cucRomer.RDatacucRomer.RData
diffGOStatscalculate difference between noise and clean differences for...
fishersMethodfishers method for combining p-values
getDiffGenesget differentially expressed genes in a data.frame
goSamplegenerate GO sample with genes
gseaDiffsresults and diffs following genesettest
gseaProportiongenerates proportion of genes in top 50
gseaProportionFishergseaProportion, combined using Fisher's method
gseaProportionMaxgseaProportion combining using max p-value
gseaProportionVaryvary gsea proportion
gseaSizeRangegenerate entries within a distribution
hyperGOMultiEnrichmenthyperGOMultiEnrichment
limitedRandomSamplereturns random sample between limits
lung.RDatalung.RData
mmGeneSetTestmultiple-multiple geneSetTests
multicontrastRomermulticontrast romer
multiGeneSetTestrun multiple geneSetTest's
multiSampleGeneSetTestrun geneSetTest for multiple samples
muscle_data.RDatamuscle_data.RData
muscleGeneSetTest.RDatamuscleGeneSetTest.RData
muscleRomer.RDatamuscleRomer.RData
noiseSamples.RDatanoiseSamples.RData
noiseSweepRes.RDatanoiseSweepRes.RData
p2signedapply regression model to pvalues
possibleNoisepossible noise genes to sample from
pvalueDiffSigcalculate difference and significance
pvaluesMultiEnrichget p-values from multiple enrichments
rankGenesrank genes using limma
sameGOStatscalculate statistics for all the same GO terms across...
samplePValueGenGSEAchange set of p-values for GSEA
sampleTermssamples genes from GO
sampletValueGenGSEAchange set of t-values for GSEA
skinGeneSetTest.RDataskinGeneSetTest.RData
skinMuscleCCOutput.RDataskinMuscleCCOutput.RData
skin_rma_data.RDataskin_rma_data.RData
skinRomer.RDataskinRomer.RData
sweepNoiseSampleDifferent values of noise
trimGOFractrim go2gene and get fractions
uc_crohns_rawData.RDatauc_crohns_rawData.RData
rmflight/ccPaper documentation built on May 25, 2017, 4:26 a.m.