Description Usage Arguments Details Value
To test reproducibility of GO term sampling, we need to be able to sample GO terms and the genes annotated to them, and possibly noise genes as well.
1 2 | goSample(go2gene, nGO, goLimits, nSample = 2,
nGene = 1000, nNoise = 0, sharedNoiseFrac = 1)
|
go2gene |
|
nGO |
the number of go terms. see Details for having different numbers of terms |
goLimits |
ranges of gene counts to restrict sampling. If multiple use a list |
nSample |
how many samples of genes do we want |
nGene |
the number of genes to sample that are annotated to the GO terms |
nNoise |
the number of noise genes |
sharedNoiseFrac |
how much of the noisy genes should be shared |
nGO
and goLimits
should be the same length
list
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