gseaProportionVary: vary gsea proportion
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Description Usage Arguments Details Value

vary gsea proportion

1	gseaProportionVary(inSize, sigProp, statistics)

`inSize`	vector of sizes
`sigProp`	list of proportions, one for each sample
`statistics`	the statistics to use

For each supplied inSize and sigProp, random indices of inSize are taken from the statistics. Based on sigProp, for each sample different numbers of indices take values from the upper 50 of ranked values and the lower 50 of ranked values. In this case each entry in inSize and denotes a different term, and they are treated independently. Each list entry of sigProp is a sample, and each vector should be the same length as inSize. The list combined method is based on averaging the statistics in this case.

list of lists for each term, with index and stats, stats contains a column for each sample, as well as a combined column.

rmflight/ccPaper documentation built on May 27, 2019, 9:31 a.m.