Description Usage Arguments Details Value
The default geneSetTest
in limma
will only
do a single index and a single test. This function allows
one to pass in a set of indices, and do all three tests
(up, down, mixed).
1 2 | mmGeneSetTest(index, statistics, ranks.only = FALSE,
do.parallel = TRUE, ...)
|
index |
list of indices generated by
|
statistics |
the statistics to use |
ranks.only |
whether to rank only, default is FALSE |
do.parallel |
use multiple cores to do everything |
... |
other parameters for |
Note that the function will try to do all three of up, down and mixed, but if there is no sign (i.e. F-statistic instead of t-statistic) the function will only do a test for "mixed"
data.frame of p-values for each alternative test
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