Description Usage Arguments Details Value
gseaProportion combining using max p-value
1 2 | gseaProportionMax(inSize, sigProp, statistics,
nSample = 2)
|
inSize |
vector of sizes to sample |
sigProp |
vector of significant proportion, i.e. fraction above 50 rank |
statistics |
the set of statistics to use (will be ranked by function) |
nSample |
number of samples to use |
For each supplied inSize and sigProp, random indices of
inSize
are taken from the statistics. Based on
sigProp
, for each sample different numbers of
indices take values from the upper 50 of ranked values
and the lower 50 of ranked values. In this case each
entry in inSize
and sigProp
denotes a
different term, and they are treated independently. The
list combined method is based on taking the
maximum p-value among the samples.
list of lists for each term
, with index and
stats, stats
contains a column for each
sample, as well as a combined column.
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