sampleTerms: samples genes from GO
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Description
Usage
Arguments
Value
Description
Generate random samples of genes from GO in such a way
that GO terms with few annotations will have
proportionately more genes than GO terms with lots of
genes. This is accomplished by iterating over each GO
term and adding sampled genes from the pool of available
genes. The fraction of genes to add is based on a value
from an exponential distribution.
Usage
1
sampleTerms(terms, term2gene, nGenes = 2000, expRate = 4)
Arguments
terms
the set of GO terms to generate a sample
for
term2gene
a list of the mapping of terms to genes
nGenes
the total number genes to sample from all
genes annotated to the GO terms
Value
list, with the full set of sampled genes in one entry,
and a term2gene list with only those genes that are in
the sample
rmflight/ccPaper documentation built on May 27, 2019, 9:31 a.m.
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Description Usage Arguments Value
Description
Generate random samples of genes from GO in such a way that GO terms with few annotations will have proportionately more genes than GO terms with lots of genes. This is accomplished by iterating over each GO term and adding sampled genes from the pool of available genes. The fraction of genes to add is based on a value from an exponential distribution.
Usage
1 | sampleTerms(terms, term2gene, nGenes = 2000, expRate = 4)
|
Arguments
terms |
the set of GO terms to generate a sample for |
term2gene |
a list of the mapping of terms to genes |
nGenes |
the total number genes to sample from all genes annotated to the GO terms |
Value
list, with the full set of sampled genes in one entry, and a term2gene list with only those genes that are in the sample
R Package Documentation
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