multiSampleGeneSetTest: run geneSetTest for multiple samples

Description Usage Arguments Value See Also

View source: R/hypotheticalDataGeneration.R

Description

For a list of samples and list of gene sets, do testing of the gene sets for each sample, as well as a meta-sample where there p-values for the samples are combined using Fisher's method

Usage

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  multiSampleGeneSetTest(samplePValues, genesets,
    alternative = "mixed", ranks.only = FALSE,
    transform2Log = TRUE)

Arguments

samplePValues

list of p-values for each sample

genesets

list of gene sets to test

alternative

the alternative hypothesis to test

ranks.only

use the ranks only

Value

list with the gene set p-values for each sample, as well as the combined

See Also

geneSetTest


rmflight/ccPaper documentation built on May 25, 2017, 4:26 a.m.