hyperGOMultiEnrichment: hyperGOMultiEnrichment
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Description
Usage
Arguments
Details
Value
Description
hypergeometric (Fisher's Exact Test) enrichment
calculations for multiple lists of genes, with common
background, as well as the intersection of the gene
lists.
Usage
1
2
hyperGOMultiEnrichment(geneList, universe,
ontology = "BP", annotation = "org.Hs.eg.db")
Arguments
geneList
list where each entry is a gene
list
universe
character vector of the background
(assumed to be common across all)
ontology
which GO ontology to use (default is
"BP")
annotation
what is the source of annotation
(default is "org.Hs.eg.db")
Details
the object returned will have an object for each sample
list, as well as the one generated from the intersection
Value
list, see Details
rmflight/ccPaper documentation built on May 27, 2019, 9:31 a.m.
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Description Usage Arguments Details Value
Description
hypergeometric (Fisher's Exact Test) enrichment calculations for multiple lists of genes, with common background, as well as the intersection of the gene lists.
Usage
1 2 | hyperGOMultiEnrichment(geneList, universe,
ontology = "BP", annotation = "org.Hs.eg.db")
|
Arguments
geneList |
|
universe |
|
ontology |
which GO ontology to use (default is "BP") |
annotation |
what is the source of annotation (default is "org.Hs.eg.db") |
Details
the object returned will have an object for each sample list, as well as the one generated from the intersection
Value
list, see Details
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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