buildPositionMap: prepares a matrix of operations and coordinates from a CIGAR
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
Description
This method will prepare a matrix of operations, query coordinates
and target coordinates from a Cigar string extracted from a BAM file
Usage
1
buildPositionMap(cigar)
Arguments
cigar
is the CIGAR string to parse
Value
matrix of coordinates
Examples
1
2
3
cigarStr <-
"46S14M5D14M2D44M3I6M2I14M3I15M1D27M1D11M1I20M1I8M2I2M3I10S"
cigarPM <- buildPositionMap(cigarStr)
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This method will prepare a matrix of operations, query coordinates and target coordinates from a Cigar string extracted from a BAM file
Usage
1 | buildPositionMap(cigar)
|
Arguments
cigar |
is the CIGAR string to parse |
Value
matrix of coordinates
Examples
1 2 3 | cigarStr <-
"46S14M5D14M2D44M3I6M2I14M3I15M1D27M1D11M1I20M1I8M2I2M3I10S"
cigarPM <- buildPositionMap(cigarStr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.