enrichmentSingleTargetPlot: prepare a plot of sequence coverage over a cas9 target region
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/EnrichmentPresentation.R
Description
prepare a plot of depth-of-coverage over and around a specified target region
Usage
1
enrichmentSingleTargetPlot(geneName, delta = 0)
Arguments
geneName
is the qualuified name for the target selected
delta
is a scaling value to zoom in beyond the target-proximal region
Value
ggplot2 figure
Examples
1
2
3
4
yamlFile <- system.file("extdata", "cas9_demo.yaml", package = "nanopoRe")
importConfigYAML(yamlFile=yamlFile)
importEnrichmentResults(system.file("extdata", package="nanopoRe"))
enrichmentSingleTargetPlot(enrichmentGetTargetList()[[1]])
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/EnrichmentPresentation.R
Description
prepare a plot of depth-of-coverage over and around a specified target region
Usage
1 | enrichmentSingleTargetPlot(geneName, delta = 0)
|
Arguments
geneName |
is the qualuified name for the target selected |
delta |
is a scaling value to zoom in beyond the target-proximal region |
Value
ggplot2 figure
Examples
1 2 3 4 | yamlFile <- system.file("extdata", "cas9_demo.yaml", package = "nanopoRe")
importConfigYAML(yamlFile=yamlFile)
importEnrichmentResults(system.file("extdata", package="nanopoRe"))
enrichmentSingleTargetPlot(enrichmentGetTargetList()[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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