enrichmentSingleTargetPlot: prepare a plot of sequence coverage over a cas9 target region

Description Usage Arguments Value Examples

View source: R/EnrichmentPresentation.R

Description

prepare a plot of depth-of-coverage over and around a specified target region

Usage

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enrichmentSingleTargetPlot(geneName, delta = 0)

Arguments

geneName

is the qualuified name for the target selected

delta

is a scaling value to zoom in beyond the target-proximal region

Value

ggplot2 figure

Examples

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yamlFile <- system.file("extdata", "cas9_demo.yaml", package = "nanopoRe")
importConfigYAML(yamlFile=yamlFile)
importEnrichmentResults(system.file("extdata", package="nanopoRe"))
enrichmentSingleTargetPlot(enrichmentGetTargetList()[[1]])

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.