getChromosomeSequence: returns a DNAStringSet object corresponding to specified...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
See Also
Examples
View source: R/ReferenceGenome.R
Description
This method will return a DNAStringSet object from the reference genome;
requires a numeric pointer to the object
Usage
1
getChromosomeSequence(dnaStringSetId)
Arguments
dnaStringSetId
is the pointer to use
Value
DNAStringSet corresponding to pointer provided
See Also
[getStringSetId()] for method to prepare numeric pointer
Examples
1
2
3
4
5
6
init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getChromosomeSequence(getStringSetId("Escherichia_coli_chromosome"))
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/ReferenceGenome.R
Description
This method will return a DNAStringSet object from the reference genome; requires a numeric pointer to the object
Usage
1 | getChromosomeSequence(dnaStringSetId)
|
Arguments
dnaStringSetId |
is the pointer to use |
Value
DNAStringSet corresponding to pointer provided
See Also
[getStringSetId()] for method to prepare numeric pointer
Examples
1 2 3 4 5 6 | init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getChromosomeSequence(getStringSetId("Escherichia_coli_chromosome"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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