extract5mC: prepares a data.frame of per-read methylC bases from provided...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Description
This method will parse a fast5 file to extract the 5mC bases classified as 5mC with a
probability >= the provided threshold_5mc variable
Usage
1
2
extract5mC(fast5file, threshold_5mc = 0.85, fast5files = NULL,
force = FALSE, ...)
Arguments
fast5file
is the fast5 file to parse
threshold_5mc
is the cutoff to apply to values returned
fast5files
is a vector of files being processed (for pretty logging)
force
to force a recalculation
...
beyond
Value
data.frame of coordinates and sequence names from fast5
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value
Description
This method will parse a fast5 file to extract the 5mC bases classified as 5mC with a probability >= the provided threshold_5mc variable
Usage
1 2 | extract5mC(fast5file, threshold_5mc = 0.85, fast5files = NULL,
force = FALSE, ...)
|
Arguments
fast5file |
is the fast5 file to parse |
threshold_5mc |
is the cutoff to apply to values returned |
fast5files |
is a vector of files being processed (for pretty logging) |
force |
to force a recalculation |
... |
beyond |
Value
data.frame of coordinates and sequence names from fast5
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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