fastqCheckup: perform a sanity check and prepare summary info on fastq file

In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data

Description

This method will prepare summary statistics on a fastq file and cache results (assuming immutable nature)

Usage

fastqCheckup(input_fastq, force = FALSE)

Arguments

input_fastq	is the path to the fastq file to check
force	logical value describing whether the analysis should be force recalculated

Value

vector of observations

Examples

fastqFile <- system.file("extdata", "example.fastq.gz", package = "nanopoRe")
fqcheck <- fastqCheckup(fastqFile)
names(fqcheck)
fqcheck[['reads']]

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.