extract5mCProbabilities: prepares a data.frame of per-read methylC probability counts
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Description
This method will parse a fast5 file to the distribution of probabilities for C residues
actually being 5mC residues
Usage
1
2
extract5mCProbabilities(fast5file, fast5files = NULL, force = FALSE,
b = 33, ...)
Arguments
fast5file
is the fast5 file to parse
fast5files
is a vector of files being processed (for pretty logging)
force
to force recalculation
b
the number of sample breaks to make
...
beyond
Value
data.frame of coordinates and sequence names from fast5
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value
Description
This method will parse a fast5 file to the distribution of probabilities for C residues actually being 5mC residues
Usage
1 2 | extract5mCProbabilities(fast5file, fast5files = NULL, force = FALSE,
b = 33, ...)
|
Arguments
fast5file |
is the fast5 file to parse |
fast5files |
is a vector of files being processed (for pretty logging) |
force |
to force recalculation |
b |
the number of sample breaks to make |
... |
beyond |
Value
data.frame of coordinates and sequence names from fast5
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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