getSeqLengths: get chromosome lengths for a named set of chromosomes
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/ReferenceGenome.R
Description
This method will return a vector of named chromosome lengths
Usage
1
Arguments
x
vector of chromosome ids
Value
vector of names
Examples
1
2
3
4
5
6
init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getSeqLengths(getChromosomeIds())
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/ReferenceGenome.R
Description
This method will return a vector of named chromosome lengths
Usage
1 |
Arguments
x |
vector of chromosome ids |
Value
vector of names
Examples
1 2 3 4 5 6 | init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getSeqLengths(getChromosomeIds())
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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