cigarQ2R: maps query coordinates to the reference sequence
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data

This method will prepare a vector of reference coordinates from the supplied query coordinates

1	cigarQ2R(poi, cigar)

`poi`	is a vector of numeric positions of interest
`cigar`	is the CIGAR string to parse

matrix of coordinates

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cigarStr <-
    "46S14M5D14M2D44M3I6M2I14M3I15M1D27M1D11M1I20M1I8M2I2M3I10S"
cigarQ2R(c(20,40,60,80,100), cigarStr)

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.

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