cleanReferenceGenome: cleanup the reference genome data
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/ReferenceGenome.R
Description
This method will remove unwanted chromosomes from the reference genome
collection; useful for when analyses are to
be linked to a set of core autosomes, for example.
Usage
1
cleanReferenceGenome(delIds)
Arguments
delIds
is a vector of chromosomes to be dropped
Value
None
Examples
1
2
3
4
5
6
7
8
init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getChromosomeIds()
cleanReferenceGenome(getChromosomeIds()[1])
getChromosomeIds()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/ReferenceGenome.R
Description
This method will remove unwanted chromosomes from the reference genome collection; useful for when analyses are to be linked to a set of core autosomes, for example.
Usage
1 | cleanReferenceGenome(delIds)
|
Arguments
delIds |
is a vector of chromosomes to be dropped |
Value
None
Examples
1 2 3 4 5 6 7 8 | init()
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
getChromosomeIds()
cleanReferenceGenome(getChromosomeIds()[1])
getChromosomeIds()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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